← Lymphatic Malformation Variant Atlas

BRAF V600E

c.1799T>A NM_004333.6 RAS-MAPK transversion, gain of function

Cancer hotspot Recurrent missense variant. COSMIC COSV56056643, COSV56065204, COSV56080151
Population · gnomAD 1.4e-6 gnomAD v4
ClinVar Conflicting classifications of pathogenicity VCV000013961
Protein region Protein kinase Residue 600 of BRAF. UniProt P15056
AlphaMissense likely pathogenic Pathogenicity score 1.00. Computational prediction, not clinical evidence.

Position in BRAF 1 catalogued

RBD (155–227)RBDProtein kinase (457–717)Protein kina…1766 aaV600E

Reported in LM · GLA · KLA · CCLA

ISSVA subsetAllele fractionSources
LM 0.1-3.6%
GLA 0.2-8%
KLA 0.2-2.2%
CCLA 0.21-2.6%

Bars show the reported allele-fraction range on a 0 to 50 percent axis.

Pathway and targeted therapy

Driver of the RAS-MAPK pathway. Repurposed drugs already used in the clinic for this pathway: trametinib and other MEK inhibitors.

Open and recent trials (8 in vascular / lymphatic anomalies for trametinib)

Primary sources (3)

  1. Expansion of the Phenotype of Lymphatic Anomalies Caused by Somatic Activating BRAF Variant.
    Fox MD, Kumar S, Britt AD, Srinivasan AS, Surrey LF, Vatsky SE, Borst AJ, Hakonarson H, Li D, Sheppard SE, Snyder KM, Adams DM. · Pediatr Blood Cancer · 2025
  2. Genomic profiling informs diagnoses and treatment in vascular anomalies.
    Li D, Sheppard SE, March ME, Battig MR, Surrey LF, Srinivasan AS, Matsuoka LS, Tian L, Wang F, Seiler C, Dayneka J, Borst AJ, Matos MC, Paulissen SM, Krishnamurthy G, Nriagu B, Sikder T, Casey M, Williams L, Rangu S, O'Connor N, Thomas A, Pinto E, Hou C, Nguyen K, Pellegrino da Silva R, Chehimi SN, Kao C, Biroc L, Britt AD, Queenan M, Reid JR, Napoli JA, Low DM, Vatsky S, Treat J, Smith CL, Cahill AM, Snyder KM, Adams DM, Dori Y, Hakonarson H. · Nat Med · 2023
  3. Somatic activating BRAF variants cause isolated lymphatic malformations.
    Zenner K, Jensen DM, Dmyterko V, Shivaram GM, Myers CT, Paschal CR, Rudzinski ER, Pham MM, Cheng VC, Manning SC, Bly RA, Ganti S, Perkins JA, Bennett JT. · HGG Adv · 2022

Mentioned in 29,826 publications indexed by Europe PMC.

Cross-references